rs51194358 SNP Detail

Summary

• ID
  rs51194358
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:13839789 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGAACTTTT TAAAAATCAC ATTTGGATTT TAAAAGATGT
  AACTTAAAAT GATGCTTGGT AGATTTTTTT TTTCTATTAA GGCTTTCTAG TTTAAGGCAA
  Y
  GGGCAGCTGA ATATCAAGGA ACTTACACAA TGAAAGGAGA GGTTGCTTAA ATGGAAGCAG
  GCCGAGTTTG AGATCCATTT AAACACACAC ACACACACA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146837580	ENSMUSSNP1605584	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51194358					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:13839789 () rs orientation: forward

Symbol	Name	Function Class
2900084C01Rik	RIKEN cDNA 2900084C01 gene	1729 bp upstream
Cpgi1318	CpG island 1318	498 bp proximal
Gm56954	predicted gene, 56954	23 bp downstream
Gm66890	predicted gene, 66890	575 bp upstream
Rr384171	regulatory region 384171	19 bp upstream
Rr427854	regulatory region 427854	85 bp proximal
Rr427855	regulatory region 427855	586 bp proximal
Rr427856	regulatory region 427856	1687 bp proximal
Tssr92402	transcription start site region 92402	581 bp upstream
Tssr92403	transcription start site region 92403	751 bp upstream
Tssr92404	transcription start site region 92404	782 bp upstream
Tssr92405	transcription start site region 92405	804 bp upstream
Tssr92406	transcription start site region 92406	969 bp upstream
Tssr92407	transcription start site region 92407	1194 bp upstream
Tssr92408	transcription start site region 92408	1213 bp upstream
Tssr92409	transcription start site region 92409	1245 bp upstream
Tssr92410	transcription start site region 92410	1283 bp upstream
Tssr92411	transcription start site region 92411	1734 bp upstream
Tssr92412	transcription start site region 92412	1806 bp upstream
Tssr92413	transcription start site region 92413	1838 bp upstream
Tssr96784	transcription start site region 96784	1599 bp downstream
Tssr96785	transcription start site region 96785	1617 bp downstream