rs51194423 SNP Detail

Summary

• ID
  rs51194423
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:77969399 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTCTATAT CTGAAGGTAC
  CTTAGGGGTT GAAATTTCAC AGGAGAATTA GCTACTCGGA ACTTGTTCAG TAGTTCTTGA
  TCTTGGGTGT TTTTTCTGTT TTTAACTCTA ACATGCTTAA TAAACACAGA TTGTAATTTT
  TGAATTAATA GCATGTGCAT CAAAAATATC AGTGCACGTG TTATTTCCAT GAGGACTTCC
  Y
  GTGGTGACGG CGACTCTCTG TTATGTTTTT CTTGACCAAA AACACTCCTA AGCTGGTATG
  AGTAGGTCAT TCAAAGGAAA TTTCTGTGCT ACTTTCTTTC AGAAAAGAAA GCTTTCCTCA
  GCTACTGCTT CTGTGACATG ATGTGAGATC CAGAGAGCAG CAGTCCATAA CCAAATCGCG
  TCGATCATGA AGACTTTGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63192714	NES17468827	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51194423					SNP	C	C	C	C	C	C	T	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63192714	NES17468827	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:77969399 () rs orientation: forward

Symbol	Name	Function Class
Gm58860	predicted gene, 58860	1892 bp downstream
Pstpip2	proline-serine-threonine phosphatase-interacting protein 2	within coordinates
Rr541209	regulatory region 541209	1459 bp distal
Rr541210	regulatory region 541210	1323 bp proximal
Tssr152066	transcription start site region 152066	489 bp upstream
Tssr152067	transcription start site region 152067	521 bp upstream
Tssr152068	transcription start site region 152068	551 bp upstream
Tssr152069	transcription start site region 152069	652 bp upstream
Tssr152070	transcription start site region 152070	767 bp upstream
Tssr152071	transcription start site region 152071	798 bp upstream
Tssr152072	transcription start site region 152072	819 bp upstream
Tssr152073	transcription start site region 152073	852 bp upstream
Tssr152074	transcription start site region 152074	881 bp upstream
Tssr152075	transcription start site region 152075	901 bp upstream