rs51194821 SNP Detail

Summary

• ID
  rs51194821
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:35958446 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTGTGTG TGTGTGTGTG
  TGTGTGTGTG TGTGTCTCCA TGTGTCCATA TCCATTCCTG TATAGTCTAC CCCATGGCTG
  GTGATAAATG CCCAAAGCTA TTTGAGAAAA TGTCCTTCAA TGGTAGATAA TCTGTCTGAG
  GAGTAGTTAA ACGTGTGTAA GCGCATGCCT TAAATGAAAA CACATTGGCC CACTTAACAC
  W
  GGTGTCTGTC CCATGTCTAT GTGTCTATCT GTGTGTCCAA GGTTATATTT GTTTCAAATA
  TGGAAAAATA TAGAACCAGT AGTTAACAAT GAATTTTGCT ACATAAAGAT TTGAGTCAAA
  ATTCAAATCC CTTCCCCAAA AGAGAGAACT AGATATTATA TCTGAAGAAT AATAATATAT
  TTGAACTGCT ATGGTCTTAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss61762171	NES17696576	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs51194821					SNP	A	A	A	A	A	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61762171	NES17696576	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:35958446 () rs orientation: forward

Symbol	Name	Function Class
Cdyl	chromodomain protein, Y chromosome-like	within coordinates
Gm48708	predicted gene, 48708	within coordinates
Rr477257	regulatory region 477257	1863 bp distal
Rr477258	regulatory region 477258	727 bp distal
Rr477259	regulatory region 477259	400 bp distal
Rr477260	regulatory region 477260	578 bp distal
Rr477261	regulatory region 477261	479 bp distal
Rr477262	regulatory region 477262	1651 bp proximal