rs51194845 SNP Detail

Summary

• ID
  rs51194845
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:3310524 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAGACTAG CTTACTCTGA
  AAGGCCTGCC CTCTCATTTT TGTGTGATTT ATGGAGAAAA ACTATTTTAA GGCTACAAAA
  AGAATTTAAT ATATTTAAAA CAAGTATTAG GTAATTTTTA TAGGAACATC CTAAGACAAT
  TAATTTTCTG AAGTTACAGT TATGGGACAG AATGCACATA CCCTTCTGTA GATACTCTGC
  R
  GCAAAATAGT CGTGTCCGGA TATGATTTTG ATTTAGTCTG AGCTCTTGCT AGTTTAGTGT
  CAAACTGAAC CAAATTAAAA AAGAGAATGT TATTAAGGGT GTTATAGTTT AAATACTTAC
  AAACAATGTT TCTGGAGGAA AAGTATACCT TTGCTATGTA TTTTGTAATT GAACACATTC
  CATTTAACAG ACAGAAAAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62609602	NES17307823	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51194845					SNP	A	A	A	A	A	G	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62609602	NES17307823	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:3310524 () rs orientation: forward

Symbol	Name	Function Class
Ccdc152	coiled-coil domain containing 152	within coordinates
Rr498566	regulatory region 498566	257 bp proximal
Selenop	selenoprotein P	532 bp downstream
Tssr4538	transcription start site region 4538	1782 bp downstream
Tssr130397	transcription start site region 130397	1912 bp downstream
Tssr130398	transcription start site region 130398	1859 bp downstream
Tssr130399	transcription start site region 130399	1770 bp downstream
Tssr130400	transcription start site region 130400	1746 bp downstream
Tssr130401	transcription start site region 130401	1738 bp downstream
Tssr130402	transcription start site region 130402	1674 bp downstream
Tssr130403	transcription start site region 130403	1627 bp downstream
Tssr130404	transcription start site region 130404	1585 bp downstream
Tssr130405	transcription start site region 130405	1567 bp downstream
Tssr130406	transcription start site region 130406	1541 bp downstream
Tssr130407	transcription start site region 130407	1505 bp downstream
Tssr130408	transcription start site region 130408	1475 bp downstream
Tssr130409	transcription start site region 130409	1458 bp downstream
Tssr130410	transcription start site region 130410	1432 bp downstream
Tssr130411	transcription start site region 130411	1384 bp downstream
Tssr130412	transcription start site region 130412	1303 bp downstream
Tssr130413	transcription start site region 130413	1065 bp downstream
Tssr130414	transcription start site region 130414	1011 bp downstream
Tssr130415	transcription start site region 130415	934 bp downstream
Tssr130416	transcription start site region 130416	644 bp downstream
Tssr133563	transcription start site region 133563	1805 bp upstream
Tssr133564	transcription start site region 133564	1774 bp upstream
Tssr133565	transcription start site region 133565	1730 bp upstream
Tssr133566	transcription start site region 133566	1718 bp upstream
Tssr133567	transcription start site region 133567	1467 bp upstream
Tssr133568	transcription start site region 133568	1340 bp upstream