rs51195458 SNP Detail

Summary

• ID
  rs51195458
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:82928739 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTTGTTCA CTTTTATTTA
  TTTTGTTTGT TTTTGAAATA GAGTCTCCCT CTGTAACTTT GGTTAGCCTT GACCTTGTGA
  TAATCCCCCT GCTTCAGGCT ACTAAGCCAT GCACTAATTT AAAAAGTACA GTTAAAGGAG
  TAAATGCCAG TTAGTATTGC TTTTTTGGTA ACTATATTAG GCATTGATTT GGATTTCCAG
  K
  TCCAAGAGTG CATTTAAGCA AGAGTTAGAG AAGTGGTTCA GTGGGTAAAG GCACTTGCCT
  TGAGTTCAAT CCCCAGAACC CACATAAAAG TGAAAATCAC CACCAACTGC GCAAGGTTGT
  CTCCTCTGGC ATCTGTATGC ATGTGTAGCA CACGTGTACC CTGTATACAT GTGTTGTCCA
  CACACAAACA CAATAATAAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60904329	NES15955919	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51195458					SNP	T	T	T	T	T	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60904329	NES15955919	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:82928739 () rs orientation: forward

Symbol	Name	Function Class
Gm19287	predicted gene, 19287	1022 bp upstream
M1ap	meiosis 1 associated protein	within coordinates
Tssr57262	transcription start site region 57262	979 bp upstream