rs51197911 SNP Detail

Summary

• ID
  rs51197911
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:8822271 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGTTTTTG GGCTGTTTTC
  TGTTTGATTG TTTGCTTTTA AGTTTTTGGG TTTTTTTTTT TTTTTTAAAA TGGGTAATGG
  ATAAAGCCCG AGGCTAGGCA GATAGCAACT TTCAGTACTA TTACATTACT GATTCTCATT
  TATTTTCAAA TGTTAGTAGC TATGCTGGAT GCTTGGCATT ATCCATTATC ATTAAGTAGG
  R
  GTGTGTGTGT GTGTGTGTGT ATTCTCTTTT GATGATTTTT TTAGTAAGAC ATAAATTAGA
  TGATTTCTTT CTAAATGTTT TAAGAGTATT CCTTTCCTGT TCCAGCTCCT ATCTTCATTG
  TCAGTGGGCG TCAGTAGAAG ATCTGGAAAA AGACAAGAGA ATTCAGCAAA AGATAAAACG
  GTTTAAGTCA AAACAGGGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss145983621	ENSMUSSNP1414443	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs51197911					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:8822271 () rs orientation: forward

Symbol	Name	Function Class
Chd7	chromodomain helicase DNA binding protein 7	within coordinates
Tssr1116	transcription start site region 1116	132 bp downstream
Tssr36434	transcription start site region 36434	491 bp downstream
Tssr36435	transcription start site region 36435	469 bp downstream
Tssr36436	transcription start site region 36436	511 bp upstream
Tssr36437	transcription start site region 36437	538 bp upstream
Tssr40890	transcription start site region 40890	356 bp downstream
Tssr40891	transcription start site region 40891	970 bp downstream