rs51197948 SNP Detail

Summary

• ID
  rs51197948
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84769589 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTTGTGGCA CGGAAGAACT CAGCCATGAA AAACAAGTTT
  CTGTTTGGCT GGATAGAGGA GGGGCCGGCA GCAAGGTGGG GAAAGGTTGG CAAGTAGTGT
  R
  TGCATCTTGG CAGAGGGTCT GTAAGGAGAC AGTGGACCCC TTGGTGCCTC GCCTGTAGGA
  ATGCTCTTGA ACATCGCACA GCTGACAGCA GCTTGCAGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60642719	NES16273272	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	A	G		A	G	G	A		G
ss145369910	ENSMUSSNP2916104	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G			G
ss322747212	CHEV_8_86566859	CHEVERUD	SCREENING_POP	f	SNP									G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs51197948					SNP	G	G	G	G	G	G	A	G	G	A	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60642719	NES16273272	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84769589 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20671	CpG island 20671	266 bp distal
Cpgi20672	CpG island 20672	1788 bp proximal
Il27ra	interleukin 27 receptor, alpha	371 bp upstream
Rln3	relaxin 3	107 bp downstream
Rr178108	regulatory region 178108	1212 bp proximal
Rr186973	regulatory region 186973	within coordinates
Rr186974	regulatory region 186974	1611 bp proximal
Tssr82060	transcription start site region 82060	361 bp upstream