rs51198172 SNP Detail

Summary

• ID
  rs51198172
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:10609286 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAGCCTGA ATTACAAGGT
  GAATCTCTGA AAAGGGAAAA GAGGAAAAAA AGCTATTTTG CAATTTGTAA TACCACTTAG
  GTACTATATG CTGCCATTGC TTCCTGCTAC AAGAAACTCA TTCCAGCTGA CTTCTTCCAT
  CGTCCTACTC CCCGGCCTAC CACGACCCAC GACAAAATTC TATGCCCGTC TAATTTTCAC
  R
  AGGCTCCACT TAGAGGCGAG GCGGGGTGTG GAGATCCGAT TTTCAGACTT TTGGTAACAG
  ACAAACAGGC TACTCTGCAT CTGCAAAATA AAACCCTCGC TATAATTATA ATCTAAGACC
  CAATTCACTT CCGCTCGCAT CTCCCTACCG ACTCGAAACT TCCCTGAAGC TCTCAAAGGA
  CCTATTTCTA CCTGTCCCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146607046	ENSMUSSNP4776132	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss325524289	CHEV_18_10609284	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51198172					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:10609286 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9702	CpG island 9702	146 bp proximal
Esco1	establishment of sister chromatid cohesion N-acetyltransferase 1	within coordinates
Rr533778	regulatory region 533778	within coordinates
Rr533779	regulatory region 533779	469 bp proximal
Rr533780	regulatory region 533780	813 bp proximal
Rr533781	regulatory region 533781	829 bp proximal
Rr533782	regulatory region 533782	1135 bp proximal
Tssr152429	transcription start site region 152429	762 bp downstream
Tssr152430	transcription start site region 152430	838 bp downstream
Tssr152431	transcription start site region 152431	983 bp downstream
Tssr152432	transcription start site region 152432	1015 bp downstream
Tssr152433	transcription start site region 152433	1060 bp downstream