rs51198745 SNP Detail

Summary

• ID
  rs51198745
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:115715370 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCTTATTT CTCCCAGTAT
  CTGCACTTTC AGTGAAAGCG AAAAAGTTTG CATTATAAAT TACATACTTC AGAAAATCAG
  TAAGTGTAAA TGTAGAACTT GGTAAAAGAT CTCAGTAAGT CAGCATTTAA AGTAACCTTT
  CCCTCCATAT TTGAGTATGA TCCATATGTA TGAAAATGTT AAGACAATAT TAAGCCTGGT
  S
  TTTGTGGATT AACTCAACTG AAAATTTCAA TTAACTTTGA GATGTGCTTG TAAGAGGTTT
  TAAAATCTAT CGTATACATC TGTTTACACA AGCATCTCAT GCTGCCCTTC CTTTATGTTG
  CTGGATATCA GTATGCATGC ATGCAGCTCA TGTCCACCTA GTTTGTAAGT AGTATGTCTG
  AAACAAAGTA TCATAACTCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss62571784	NES17297667	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	G	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs51198745					SNP	C	C	C	C	C	C	G	C	C	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62571784	NES17297667	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:115715370 () rs orientation: forward

Symbol	Name	Function Class
Gpc5	glypican 5	within coordinates
Rr297879	regulatory region 297879	170 bp distal
Tssr130199	transcription start site region 130199	463 bp upstream
Tssr130200	transcription start site region 130200	407 bp upstream
Tssr130201	transcription start site region 130201	358 bp upstream
Tssr130202	transcription start site region 130202	342 bp upstream
Tssr130203	transcription start site region 130203	311 bp upstream