rs51199833 SNP Detail

Summary

• ID
  rs51199833
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:4218924 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              GGACAGCTGG CATTCACCAA
  TGAGATCCCA AGGGCCAGGA CCACCACTTC TTCCATCAGC TCTTGCCAAG TTCCTGATGT
  TTCGCGCCAT GCACCTTGCC TCACACAGGG GACAGTTTGT CAGGAAATCG GGTAAGCCCT
  TCGCCTTGTG GAGCATGGTA GTTAAAAAGC CCCTAAGTCC ACAAAGGTAG AAACTGCGGA
  W
  AGGGGACAAG GGGCTAAGGA GACGAGAGTG ATGGAAGCCT CTAAGGTCAG GCATTGGAAC
  TTAAGATAGG CCGGGCGTGG TGGAAAGAGT AAGAGAGGAC TTAGAGGTGC TGAATCATTC
  TTAATTCTGA GATCCTACTG AAAAGTCTTA GGTCTTCAAC CCTAGGTAAC CTGTGGGTGG
  AAGGAAGTAA CATACACGTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss146743534	ENSMUSSNP6824973	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
ss323240830	CHEV_10_6077617	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs51199833					SNP	A	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:4218924 () rs orientation: reverse

Symbol	Name	Function Class
Akap12	A kinase anchor protein 12	within coordinates
Cpgi1267	CpG island 1267	1782 bp distal
Gm67397	predicted gene, 67397	within coordinates
Rr384064	regulatory region 384064	187 bp upstream
Rr426945	regulatory region 426945	1628 bp distal
Tssr92242	transcription start site region 92242	440 bp downstream