rs51200083 SNP Detail

Summary

• ID
  rs51200083
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156939265 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGTACCTGG GACCTTGTCC GTACTACTGT CCTGCAGACC
  CCACACAATG CTGTGACACC AAGAAGCATC TATGTGGGCC CTACAGAATA TATTCCTTCG
  Y
  ACAGGAATCC AAACCGGGCA TGCAGGGTAT GAGAGTCTGC GATTAAGGAG CTTGCCTCTA
  GTTTCAGGAT AGAAACGCTC ATGAAAGCTT TATGGCAGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148091870	ENSMUSSNP3739581	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss320584159	CHEV_2_156923081	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51200083					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156939265 () rs orientation: forward

Symbol	Name	Function Class
Rr568431	regulatory region 568431	1668 bp distal
Samhd1	SAM domain and HD domain, 1	189 bp downstream
Tldc2	TBC/LysM associated domain containing 2	863 bp downstream
Tssr27104	transcription start site region 27104	1113 bp downstream
Tssr27105	transcription start site region 27105	1158 bp downstream
Tssr27106	transcription start site region 27106	1247 bp downstream
Tssr27107	transcription start site region 27107	1391 bp downstream
Tssr27108	transcription start site region 27108	1517 bp downstream
Tssr27109	transcription start site region 27109	1589 bp downstream
Tssr27110	transcription start site region 27110	1643 bp downstream
Tssr27111	transcription start site region 27111	1794 bp downstream
Tssr27112	transcription start site region 27112	1824 bp downstream
Tssr27113	transcription start site region 27113	1841 bp downstream
Tssr27114	transcription start site region 27114	1915 bp downstream