rs51200172 SNP Detail

Summary

• ID
  rs51200172
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:5642298 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGGCTAAT ACTGAAAAAC
  TCTATCTACA GATGCTTGTT TCAGAACCAA TCAAACATTG TTATATACTT TCTGAGACAA
  AAATCTTTGT GAGACAAATG AATTCCATGC ACAGGCCAAT GGCCCATTTC TTTGGAACAA
  TACTCTAAGC ACAGGAAAAT TCTAATTAAA AAAAAAAAAA CTAAAACAAA AACCAAAAAA
  Y
  ATTAGTGTGG TGAATTTCCA GAAGACTACG GTAGCCCTTC AGATTTTGTC TTGAAAAGAC
  TGATCCTAGA TTAGCAGACA ATGGGGAGTT GTAAAAGTAC ACTTATTGTA CTAACAGCTA
  AGACAGAAAA TGTACTAGGA GATTCTGGTT TAGACACTAT TGTTTTACTC TTGTTCTGTG
  AACACATCTC TTATTGGGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss145954943	ENSMUSSNP1161200	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs51200172					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:5642298 () rs orientation: forward

Symbol	Name	Function Class
4930423M02Rik	RIKEN cDNA 4930423M02 gene	14 bp downstream
Cpgi13998	CpG island 13998	1527 bp proximal
Fam110b	family with sequence similarity 110, member B	1711 bp upstream
Rr588322	regulatory region 588322	1333 bp proximal
Rr588323	regulatory region 588323	1834 bp proximal
Tssr36378	transcription start site region 36378	1786 bp upstream
Tssr36379	transcription start site region 36379	1835 bp upstream
Tssr36380	transcription start site region 36380	1918 bp upstream
Tssr36381	transcription start site region 36381	1970 bp upstream