rs51200228 SNP Detail

Summary

• ID
  rs51200228
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:176650881 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCTGCATC TAATCCGGAC
  TTTCTTTAAC CCAGAGTGAG TAAGAAGGGG CCAGACCTAG TTATCACTCA GCACCAGGTT
  TGTGTTTAGA AGAAGGTCTG TGTGGAAATC AGATCGGAAT GGAGGAAGAG TGGTACTAAG
  CTCACCATGA AGACAATAGG ATTTCATCTT CCATTTCAGA CCAGGAAGGC TGGTTCTTTT
  Y
  AGTGTTATTC ATGTAGAGGA TGAGTTTCTG TAAGTAAAGT AACCATATTG CATATTTTGT
  AACATGGAGT ATTAAGTAAT AAAACTTAAA AGTTAATAAC ATTGGAGAAA ATGAAGAACA
  TATGTTCATA AAATGTGTTT TCATAGATGA CTGATAATGA TAATTATCAG TCTGATTGTG
  TGTGTGTTCA TGTTCTTATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ
ss60349458	NES15854812	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ
rs51200228					SNP	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60349458	NES15854812	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:176650881 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr423912	regulatory region 423912			1044 bp distal
Rr423913	regulatory region 423913			15 bp distal
Rr423914	regulatory region 423914			657 bp proximal
Rr423915	regulatory region 423915			1837 bp proximal
Sdccag8	serologically defined colon cancer antigen 8			Intron
				Noncoding-Transcript-Variant