rs51202947 SNP Detail

Summary

• ID
  rs51202947
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16350695 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A CAGAAGTCAT TGGTAGAATG CTTGCATAAA TACACAAGGC
  ATTCGGTTCC ATCCTAAGCA CAGAGTGTCT GGAGTAAACT AAAGTTAATT TTGTTTTCTG
  K
  TTTTTGAGAC AGGGTTTCTC TGTGTAGCCC TGGCTGTCCT GGAACTTGCT TTGTAGGCCA
  GGCTGGGCTT GAACTCAGAG AGATCTGCCT CTCCCTTCCA A                    
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148390878	ENSMUSSNP5696887	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs51202947					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16350695 () rs orientation: forward

Symbol	Name	Function Class
Arhgap35	Rho GTPase activating protein 35	1382 bp upstream
Cpgi18383	CpG island 18383	988 bp distal
Gm29442	predicted gene 29442	1857 bp downstream
Gm29443	predicted gene 29443	within coordinates
Gm44589	predicted gene 44589	305 bp downstream
Rr400125	regulatory region 400125	1094 bp downstream
Rr642707	regulatory region 642707	1788 bp distal
Rr642708	regulatory region 642708	1287 bp distal
Rr642709	regulatory region 642709	1661 bp distal
Rr642710	regulatory region 642710	366 bp proximal
Rr642711	regulatory region 642711	474 bp proximal
Rr642712	regulatory region 642712	1554 bp proximal
Tssr64615	transcription start site region 64615	1150 bp downstream
Tssr70756	transcription start site region 70756	1982 bp upstream
Tssr70757	transcription start site region 70757	1965 bp upstream
Tssr70758	transcription start site region 70758	1910 bp upstream
Tssr70759	transcription start site region 70759	1879 bp upstream
Tssr70760	transcription start site region 70760	1749 bp upstream
Tssr70761	transcription start site region 70761	1703 bp upstream
Tssr70762	transcription start site region 70762	1632 bp upstream
Tssr70763	transcription start site region 70763	1494 bp upstream