rs51203818 SNP Detail

Summary

• ID
  rs51203818
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:109690568 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGAG GGAGCCTCAG GAAACCATGT
  Y
  GCCTACCAAG GTCCAAAGAT TGAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61450578	NES16836846	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C	T	C	C	C	C	C
ss136958066	ENSMUSSNP1114460	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51203818					SNP	T	T	C	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61450578	NES16836846	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:109690568 () rs orientation: forward

Symbol	Name	Function Class
Gm39427	predicted gene, 39427	136 bp upstream
Gm68591	predicted gene, 68591	within coordinates
Rr401695	regulatory region 401695	937 bp upstream
Rr687008	regulatory region 687008	826 bp proximal
Rr687009	regulatory region 687009	1055 bp proximal
Rr687010	regulatory region 687010	1101 bp proximal
Tssr87256	transcription start site region 87256	100 bp upstream
Tssr87257	transcription start site region 87257	133 bp upstream
Tssr87258	transcription start site region 87258	146 bp upstream