rs51204682 SNP Detail

Summary

• ID
  rs51204682
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:184469220 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATCCAGTAG AGAAATGCCA CAGGCTTCAG
  ACAGCAAGCA TCAGTCACAT CTCGGAACTT TATAGCACTG AAGCACACCC ATTTGCAGTG
  AAGACGTGCC CCACAAGGGT AGAAACTGAG CCACTGGACA CACTAGTTAA CGTTTTGTTC
  W
  TTCTCAGGTA TGTGCTCTTT AGCTTCCGGA GAGAGAGCTA GCCACATGAG CTCTGGTTGT
  GGTTGCTAAA TGATTGAAAC TGAATGGTTT ATTGCTAAGG GGAGAGAAGG GAATGCAGAT
  ATAATAAATT ACTCCACATT GAAAACAAAC                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60355364	NES15858854	PERLEGEN	MM_PANEL2	f	SNP	T	A	A	A	T	A	A	A	A	T		T	A	T	A		A
ss320168861	CHEV_1_186560902	CHEVERUD	SCREENING_POP	f	SNP											T					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs51204682					SNP	T	A	A	A	T	A	A	A	A	T	T	T	A	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60355364	NES15858854	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:184469220 () rs orientation: forward

Symbol	Name	Function Class
Gm34342	predicted gene, 34342	within coordinates
Rr425268	regulatory region 425268	949 bp distal
Rr425269	regulatory region 425269	789 bp proximal
Rr425270	regulatory region 425270	1052 bp proximal
Tssr10590	transcription start site region 10590	1614 bp downstream
Tssr15648	transcription start site region 15648	1996 bp upstream