rs51206479 SNP Detail

Summary

• ID
  rs51206479
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:99090505 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTGGATAG ACTTGAATAA
  ATACTAGCTT GCAAACTTAG TTGCAAATGC TGCTGAGAAA ACTGGGAAAT GTGTTAGGAT
  TTCATTTACA TCCAAGCTGC AATCTCAGAA GTGTGTAGGT ATTCCTATTT GCAAATCCCA
  AACTAGGTTT GATGTTTTTG ATTTACTAAC TTTATATGCT TTAAAAACAT CTCCAAAGGT
  R
  GGACAGGGGC ACAGCAGTGC ATTGGAGTTT GGGCCAAACA AAACAAAGCT CTAGAAGTCT
  CCAATGTTTC TCTGAAAATT GATGTTTTCG ATAGTAAGTC AAAGGCTGAA ATAATTTAAA
  AGAAGACTGG AAAAGTACAT TTTCTTAAAG ACTACGAAGG GGCTGGAGAG ATAGCTCAGT
  GGGTGAAAAC ATTGACTATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61200733	NES16706835	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51206479					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61200733	NES16706835	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:99090505 () rs orientation: forward

Symbol	Name	Function Class
Prkg2	protein kinase, cGMP-dependent, type II	within coordinates
Rr615191	regulatory region 615191	1420 bp distal
Tssr52014	transcription start site region 52014	1117 bp downstream
Tssr52015	transcription start site region 52015	1140 bp downstream
Tssr52016	transcription start site region 52016	1176 bp downstream
Tssr52017	transcription start site region 52017	1231 bp downstream