rs51206900 SNP Detail

Summary

• ID
  rs51206900
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:119908480 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACATCACT TATATAAGTT
  GTGCTCTGAA TATCACAATA GCTGAAAATT CCTTAACATT TAATAACTCG CAATCCTTCT
  TTGATTTTCT TTTTCTCAAG TTCTAAAACT TGTAAAATAA GCATATCATA AAAAAAGAAA
  TGAGAGTGTA GAAGTTAAGC TATGAAGCAT GTTCTGAATC AAATATATAA AGGTAAAACT
  S
  ACACTCCTGG GGCAGAATTA GGGCTTCTGT TTCCTCACAT TGGTTCTTGA AAATAAAAAA
  TGCGTCATGT AATCCCAAAG GAGCTTACTG TGTATTTGTC TGCATGTGGG CAGAGGCAAA
  GATGCCCTCA TATTGTGGTC CCCTTTGTCT ATATTTCCCT TCAACGCATC TCTAACTGAA
  GAATAAGTTC TTGAGAAAGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss61734979	NES17669796	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs51206900					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61734979	NES17669796	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:119908480 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5238	CpG island 5238	1121 bp proximal
Rr474318	regulatory region 474318	725 bp proximal
Tmem196	transmembrane protein 196	1077 bp upstream
Tssr115576	transcription start site region 115576	1359 bp upstream