rs51206998 SNP Detail

Summary

• ID
  rs51206998
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47038186 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAATGCCT AGCACCATAA
  ATACAACAAA CTTGCTCTTA CCAGCCGGAA TCCTACTCTG ATGCCAAAGC CTTCCTTTTT
  AGGAAGTTGA CAGGGACTGT ACCGTGCCCT GAGGAAAAAC CATTCAGCTC CACAGCAAGA
  GAGAGCCAGG GCAGAGAGTG ACCCTGGAGG TGCATGTCTG GGGGGGCCTG GACAGACAGA
  Y
  TTACCCCAAT TGTCAAAGGA TGGCTCTTTC CTCCGGTTCC AGCGCTCCTT AAGCGCATAT
  TTCAGCATCT TGTCGCTGGC GTCCACGCTC ATCACGCTGA AGCCCTCTTC CACCAGCATG
  ATGGAGTCCA CTCTGGATGA GGTCAGAAAC GGGGGACTAG AGGACCAGTC AGAGGAGCCT
  GGGAGGCCAA ATGTGTGTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss145701270	ENSMUSSNP4227303	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs51206998					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47038186 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9242	CpG island 9242	1443 bp proximal
Gm65860	predicted gene, 65860	1787 bp upstream
Gnmt	glycine N-methyltransferase	within coordinates
Pex6	peroxisomal biogenesis factor 6	1717 bp downstream
Rr331605	regulatory region 331605	1386 bp distal
Rr331606	regulatory region 331606	215 bp proximal
Rr331607	regulatory region 331607	815 bp proximal
Rr339923	regulatory region 339923	1014 bp proximal
Tssr148377	transcription start site region 148377	937 bp upstream
Tssr148378	transcription start site region 148378	918 bp upstream
Tssr148379	transcription start site region 148379	905 bp upstream
Tssr148380	transcription start site region 148380	542 bp upstream
Tssr148381	transcription start site region 148381	96 bp downstream
Tssr148382	transcription start site region 148382	1898 bp downstream