rs51207551 SNP Detail

Summary

• ID
  rs51207551
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:20412757 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGACTTCAT AAAGGCAATA
  CTCTAGTGCT TACCTTAGTT TATACTTCTC TGGAATGACT CGTCTCCAGG ACATGTTACA
  TAATTCCCAA TGAGCCTGAA TCATTTCCTC CATGACGTTT AGATATATGA ACCTTTAGCT
  ATACGTAACA TTTAGACAAG CTACCTTAGC ACTGCTTAGA AACAGCATTT ATCCTGGTTC
  Y
  TAGTAAACCC AAGGCTCTCT TTCTAATTTC CACTGGTGAT TTCAAATGAG TCCAGAAAAC
  ATTCAAGGGG AGAGATGCTG TGAAATTAAG AGAGTGTTAT ATGAAAAAAT GTGATAATCA
  GTGGTGCTTA TGAGCCGGAA GTCAGTGCCA GATTTGCCTA CATAAGAGAC TTCCAGCGGG
  AAGATCATCC AGTCACCCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63231353	NES17473151	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51207551					SNP	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63231353	NES17473151	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:20412757 () rs orientation: forward

Symbol	Name	Function Class
D19Mit23	DNA segment, Chr 19, Massachusetts Institute of Technology 23	504 bp proximal
Gm32689	predicted gene, 32689	138 bp upstream
Rr356916	regulatory region 356916	357 bp distal
Rr356917	regulatory region 356917	1644 bp proximal
Rr361508	regulatory region 361508	1657 bp proximal
Rr364130	regulatory region 364130	487 bp distal