rs51208849 SNP Detail

Summary

• ID
  rs51208849
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:94799546 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTAGCTTCC ACCCAAGTAC
  AGACCTGTTT ATGCATTTTT AACCCAAGGA GAAATAGTTT CGCAAGGGTC TGTAAAAGTA
  ATTGACACCA CTGGCTGATA ATTCTATAAT GGCCCTATTA ACCACGGGGT ATTCTGTTTA
  CTTCACAGCT CAAGAAGGTG ACCCTTTCTG ATGAAGGGAT TCATCGAGAT CTGCTCTTAG
  Y
  AGTGAATGAT ATTTTATTCT AAACTCGCGC TCTAAAAGTA GGTGTGCATG CATGTTCATG
  CATGCGTGTG TTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT ACCCACAGAG
  TATAGAAGAA AGCATCATAT TACCCAAAGC ATGAGTTACA GGGAATTATA AGCTGGGTAG
  TGTGGGTGCT GGAGTAGAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60512640	NES16528928	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51208849					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60512640	NES16528928	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:94799546 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8509	CpG island 8509	701 bp distal
Gm31407	predicted gene, 31407	within coordinates
Kcnj6	potassium inwardly-rectifying channel, subfamily J, member 6	986 bp upstream
Tssr142245	transcription start site region 142245	1250 bp upstream
Tssr142246	transcription start site region 142246	1201 bp upstream
Tssr142247	transcription start site region 142247	1095 bp upstream
Tssr142248	transcription start site region 142248	1071 bp upstream
Tssr142249	transcription start site region 142249	983 bp upstream
Tssr142250	transcription start site region 142250	960 bp upstream
Tssr142251	transcription start site region 142251	934 bp upstream