rs51208971 SNP Detail

Summary

• ID
  rs51208971
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:61003691 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACGGCCAGG GGAGCAGAAG GGCCTGTGGC AGCCTGAAGC
  TGAGTGACCA CAGAGGTCCC TCTAGCAACC AACTGCACTA CCTACACATG AAGGGACTTG
  K
  CTGTAGCAGT CAGACCTAAA GAAGCTAAAC CGTGCTCAGT GGATGCAACC CAGTATAATG
  GATGCTGCCA AACCCAGTCC CACCTCCTCT TGGGTACATT                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62413125	NES17250051	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51208971					SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62413125	NES17250051	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:61003691 () rs orientation: forward

Symbol	Name	Function Class
C1qtnf9	C1q and tumor necrosis factor related protein 9	1892 bp upstream
Gm34997	predicted gene, 34997	within coordinates
Rr389738	regulatory region 389738	449 bp downstream
Spata13	spermatogenesis associated 13	1686 bp downstream
Tssr125961	transcription start site region 125961	1839 bp upstream
Tssr125962	transcription start site region 125962	1856 bp upstream
Tssr125963	transcription start site region 125963	1878 bp upstream