rs51209862 SNP Detail

Summary

• ID
  rs51209862
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:180077324 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGGGTTACA TCTCCAGCTC CACCCCACCC TCGTTTTTAA
  TAATCAATAT GGGTTGCATC TTCAACCTAC CGATTTTTCT CCTCTTGAGA TAAGGTCTCA
  Y
  TAAGTAGCCC TGATTAGTCT GGAACTGGAT GGGTAAACCA AGCTGGCCTG GAATTCAGGC
  TTCGGCCACC AGAGTGCTGG GATTAAAGGC CTGTGCCAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146378791	ENSMUSSNP5071703	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs51209862					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:180077324 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi1103	CpG island 1103			383 bp proximal
Psen2	presenilin 2			Intron
				Noncoding-Transcript-Variant
Rr372537	regulatory region 372537			109 bp upstream
Rr424423	regulatory region 424423			1620 bp distal
Rr424424	regulatory region 424424			1351 bp distal
Rr424425	regulatory region 424425			708 bp distal
Rr424426	regulatory region 424426			within coordinates
Rr424427	regulatory region 424427			1467 bp proximal