rs51210623 SNP Detail

Summary

• ID
  rs51210623
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:5858436 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGGCTATC CTGAGCATCA
  GATACTACAC TTTTTTAAGG CACAAAGGAG TATGAATGCA TGTCGTTTTG TTGTTGGTTG
  TGTTTTAGGG AAGGGAAATG CTACATTTAT CTTTGTTGAC TGTTGGCAAG AAGATTGATG
  CCTACACAGT TGGTGCTGTG GATTCTGTAA CCTCAGTTTC AACCAGTTGC AGGTGGGAAG
  Y
  ATTAGGGTGA GGTGGGAAGT GTACCTCTGT TGAACCTAAG TGCTTCTGTT CTTCATTATT
  CCCTAAGCAA TACTGTATAA TGTCTGGATA GCATATACAT TATGTTAAGT ATCGTGTGTT
  CCTGGAGATT ATTTGAGATT TACAAGAGGA TATAAATAGG TTAGGTTAAG TGCAAATGTT
  ATACCATTTA ACTTAAGTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146275400	ENSMUSSNP4651081	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs51210623					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:5858436 () rs orientation: forward

Symbol	Name	Function Class
Nudt5	nudix hydrolase 5	within coordinates
Rr49685	regulatory region 49685	636 bp distal
Tssr16009	transcription start site region 16009	768 bp downstream