rs51212138 SNP Detail

Summary

• ID
  rs51212138
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:45025752 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCAGCCTT TCTTCAGGAC
  TGTGCCAGGC TGGCCCCAGC TTCCTCAGGG CCCACCATAC TCAAAGCTCT CCCAGCTGCC
  TTCCATCCAG AAATGTGTGG GTACCAACTG CTGATGGCTG GCATCCTGCC TCTTTGCCTG
  CTGTTCTCTC ACTTAAAGAT GCAGCCTGTT ATGAGAGCCA GGGCTTCCCT CTCACTTGTA
  W
  AGCAGCTACA GTGCCTGGGA GAACAGCCTC TACTTCAGGT TATAACACGT GCAGTATACC
  AAAGGGAGTT GAGCAGTAGG AAGTGGCCTT TTGGAAAGAC AGCAAGTGCA GTAAGACATC
  ACATGCCCAC TATCAACAGA AAATTAATTT TATTTTTAAA TCCAAGGGAC CGGATTAAAA
  AAAAAAATCT ACCCTCAGAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61003643	NES16116955	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	T	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51212138					SNP	A	A	A	A	A	A	A	A	T	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61003643	NES16116955	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45025752 () rs orientation: forward

Symbol	Name	Function Class
Snrnp70	small nuclear ribonucleoprotein 70 (U1)	125 bp downstream
Tssr66520	transcription start site region 66520	842 bp upstream