rs51212323 SNP Detail

Summary

• ID
  rs51212323
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127316440 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTATAGTG TGGTTTCTGA
  AGTTTGCAAT GAAAACATGC TTTATTCACA CTTTGAAATA AGCATTCCTC CTAGAACAGC
  AGTGTAGCAT AACAAATTGT TTGCAGTTTA GTGAAAATGA GCTGCTCTGC CACTTCACTG
  TTCAAAAGGC CCGACCCAGG GTAAGTCCTC CCCCAAGAGG TCTAAGAAAA TAGAACCTGC
  R
  GCGTTTGCAG CTCACGTTGG GCAGCTTGAA CAGCAGTTAC CTTTAGAATG CCGTTGGCTT
  ATAGGGTGTC CGTGGGCTGA GCTAACTTTC CAGGCTACAG CAATGTCCCT CTCCAGGACA
  CCCGGGATTC TCAGTAACTC TTTAAAACTC TAGATGTCAG ATCCTCTGCC AAGGTCCCCA
  GTCCGTCCCC TCTGGGTTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61334495	NES16949978	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51212323					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61334495	NES16949978	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127316440 () rs orientation: forward

Symbol	Name	Function Class
R3hdm2	R3H domain containing 2	within coordinates
Rr213569	regulatory region 213569	840 bp distal
Rr213570	regulatory region 213570	561 bp proximal
Rr218482	regulatory region 218482	161 bp proximal
Rr221959	regulatory region 221959	1066 bp distal
Tssr96215	transcription start site region 96215	1076 bp upstream
Tssr96216	transcription start site region 96216	1119 bp upstream