rs51212373 SNP Detail

Summary

• ID
  rs51212373
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:31764957 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGTATGGC ACTGGGCATA
  CCTGTCCCCA TACATGCCAT GCCACAGGAT TGCATTTCAC CATGGACTCA TCTGTGTACA
  CAAATTCCTT GTCCCAGTGC AATCATGTGG CAGTGAATGT ACATACCTGT TTACACACAA
  GCAGTGTCCT AGCCCTTCCA TTTGGCAGCA TGGCATTGTA TGTTCTATTA TGAGCTGTGT
  Y
  TCAGCACCAT GATGTGGTGA CTTGATCATG CATGCTCACA CAGGAGCCAT GTTCCAGTGT
  ACTCATGTAG TGTCACAGGC ATGTGTGCTC ACACACATAC TGAAACCATT GCATGGTGGC
  ACAATCACAT GTCATCACAC ACATACCATG TGCCTGCCTC ATTGTGCAGT GGCTATGACA
  AAATAATCTG AACATGTCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63012847	NES17430122	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51212373					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63012847	NES17430122	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:31764957 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9789	CpG island 9789	1933 bp proximal
Gm58914	predicted gene, 58914	within coordinates
Rr535275	regulatory region 535275	within coordinates
Rr535276	regulatory region 535276	590 bp proximal
Rr535277	regulatory region 535277	638 bp proximal
Rr535278	regulatory region 535278	1179 bp proximal