rs51212405 SNP Detail

Summary

• ID
  rs51212405
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:48267955 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                      A ATGCAAGCTA ATCAGTCCAG AAAAAGGCCA AAAGCGGCTG
  GCGAAAGCCA GCTTGCTGCT CGGCCTCCGG ACTGTCGGCT TCAGGGTCCT AGTGCACATC
  T
  GCCTTATGTG CAGAGGTATC ATTCAGACTC TTTCATTCCA AAAGAGGAAC AGAGGAAAAT
  GCAACAGGCA TTTCCAGTTT TTGAAGGAGC CGAGGGAGGG C                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss133603904	ENSMUSSNP3294587	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss146058408	ENSMUSSNP6864331	ENSEMBL	ENSEMBL_Sanger	r	SNP	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs51212405					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:48267955 () rs orientation: reverse

Symbol	Name	Function Class
Gm22122	predicted gene, 22122	1594 bp downstream
Gm30362	predicted gene, 30362	within coordinates
n-TCgca50	nuclear encoded tRNA cysteine 50 (anticodon GCA)	1986 bp downstream
Tssr56117	transcription start site region 56117	1794 bp downstream