rs51212581 SNP Detail

Summary

• ID
  rs51212581
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79748246 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAAC CTCACCAGCA GTGTGGTTCA
  C
  ACGGCAGCTT ACAGAAGAGT ACAAA                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135376532	ENSMUSSNP6920291	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss320812291	CHEV_3_79644861	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51212581					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79748246 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13278	CpG island 13278			1686 bp proximal
Gm64378	predicted gene, 64378			1826 bp upstream
Rr397727	regulatory region 397727			1282 bp upstream
Rr578586	regulatory region 578586			541 bp proximal
Rr578587	regulatory region 578587			780 bp proximal
Rr578588	regulatory region 578588			1730 bp proximal
Rr578589	regulatory region 578589			1837 bp proximal
Tmem144	transmembrane protein 144			Intron
				Noncoding-Transcript-Variant
Tssr29591	transcription start site region 29591			1820 bp upstream
Tssr33748	transcription start site region 33748			1703 bp downstream
Tssr33749	transcription start site region 33749			1918 bp downstream