rs51213771 SNP Detail

Summary

• ID
  rs51213771
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:99452078 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTCAGTAA TTTTATTTAA
  AGCCAGATTG AGCCCATTTA AGATTGTTAG CCTTGTCCTA AATCAAGTCT GTGAAATCAA
  ATGTGTTGTA TTCTTTTTTA TTCTAGTACA TATTACCATT CATAAATACA TTTAAATGTT
  CATCTGTCCA CCCATGTAAC ACCTAAAATC ACGTCCTAGT ATGCCTGCTA CAACCAGGCA
  R
  ATTGTAATTG TATATAGCAC ACAAAAGCAT TGACAATTGT ACAATAGTCT CTATATGTGT
  GAGCTATACC TCACCCAGAA ACTCGGGCAA TACATCTTCT AGGAAACCCC TCCCTCGAGG
  AAGAACTAGG TGACTCTCCC AACTCCATAT ATTTTCTTTA AAATGATTTT TCATTTATTT
  ATTTATTGTG TGTGTGTGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61443613	NES16826005	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	A	A	G	A	A	A		A	G	G	G		G
ss323136014	CHEV_9_99470444	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs51213771					SNP	A	A	G	A	A	A	G	A	A	A	A	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61443613	NES16826005	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:99452078 () rs orientation: forward

Symbol	Name	Function Class
Armc8	armadillo repeat containing 8	1126 bp upstream
Cpgi22196	CpG island 22196	939 bp distal
Rr401625	regulatory region 401625	919 bp downstream
Rr685420	regulatory region 685420	1387 bp distal
Rr685421	regulatory region 685421	636 bp distal
Tssr91072	transcription start site region 91072	1347 bp upstream
Tssr91073	transcription start site region 91073	1114 bp upstream