rs51214307 SNP Detail

Summary

• ID
  rs51214307
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:113620222 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTAATTTA GTGATGAAAG
  TTAATTCAGC TTTTATTTCT GTACATTTTT TTGTCCCACA GAGTTTTCCA CTCTTTGCTG
  ATTTTTTTTT AATCACATAT TCAAACTAAA GGAGTAAAAT TACTGAGATC AGAAATATTT
  TAGGACAAAG TGCTCACTGT GAAGATGTGG GGAAGGGGGT CGTTTGCATG GTGGATGATG
  Y
  TACCTCTTCT TTCTTACGTG GTGTCCCTGC CTATGGGATG TCATCTTGTT CCACGTGGTA
  GTCTGTGACC AGAAACTAAA GCAATTAGAG CAAACAATGT CGTCGTCTGA GACTGCAATA
  ATAGAACAGC AAGTCTTACA GTATAGTGAT TTAGAGTGTT TGTGATGAAA AATATAAGCA
  ATAAACCCAG GGGATTGATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss61225183	NES16842666	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs51214307					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61225183	NES16842666	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:113620222 () rs orientation: forward

Symbol	Name	Function Class
Clasp2	CLIP associating protein 2	within coordinates
Rr198874	regulatory region 198874	1222 bp distal
Rr205836	regulatory region 205836	1178 bp proximal
Tssr87530	transcription start site region 87530	1581 bp upstream
Tssr87531	transcription start site region 87531	1677 bp upstream
Tssr87532	transcription start site region 87532	1827 bp upstream
Tssr87533	transcription start site region 87533	1874 bp upstream