rs51215474 SNP Detail

Summary

• ID
  rs51215474
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:60554741 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACTCTGAA TGTAGGTAGT
  ACCATTCCAT GCTCTGGAGT TCTGAGCTGA CAAAAGAGAC AAGACATAAG CATCAGCATC
  CGTCTGGTCC CACTTCCCGA TTGTGCTTAG AATGTGACCA GATTTCTCCA CTCCTGCTGC
  CTAACCTTCC AACTGTGATG GTCTGTACCC CCAGACTGTA TACCAAAGTC AACTCTCTCT
  Y
  CCTTGCTTTT GACACAGAGA CAAGAAAAGT AACTACCCCC TATGGTGCTT CACAATATTA
  CCAACAAAGC AAACCACTAG ATTTGGCTTT CATATGAAGA TACTGCTGCT ACTTCTGAGG
  GAGTTAAAAG ACCACGTGTG CATGTGTTCT GCTCATTTTG TAGGTTTCTT TTCACTTTTG
  CTAACTAATG AATGCTCTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss146651396	ENSMUSSNP2114418	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs51215474					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:60554741 () rs orientation: forward

Symbol	Name	Function Class
Itgb6	integrin beta 6	1754 bp upstream
Rr557687	regulatory region 557687	1765 bp distal
Rr557688	regulatory region 557688	1264 bp distal
Tssr24212	transcription start site region 24212	1855 bp upstream
Tssr24213	transcription start site region 24213	1740 bp upstream
Tssr24214	transcription start site region 24214	1726 bp upstream