rs51215623 SNP Detail

Summary

• ID
  rs51215623
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:48265744 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAGAAAGTCT TGAGATTCAA CGAGCACACA GTACCAGCTG
  TTACATGAAG GACCTGATGA GAGATTAACA CAGTTGTAGC ATCAATGGGT TGAATCTCCA
  R
  CCATGAGTCA AGAGGGAAAG TGCATCTATA CCATGAATGT GGATGGTTGC CAAAATCACA
  TGAAAAGGGG GCACCTGGAT TTGAACCAGG GACCTCTTGA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60884043	NES16035353	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	G	G	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51215623					SNP	A	G	A	G	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60884043	NES16035353	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:48265744 () rs orientation: forward

Symbol	Name	Function Class
Gm22122	predicted gene, 22122	418 bp upstream
Gm30362	predicted gene, 30362	within coordinates
n-TCgca12	nuclear encoded tRNA cysteine 12 (anticodon GCA)	66 bp downstream
Tssr56117	transcription start site region 56117	406 bp upstream