rs51216004 SNP Detail

Summary

• ID
  rs51216004
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:79584878 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCATAGTA GGGGCCAGGG
  CCCCGACTCA GCCAATCCTG GCAGTTCCCT TGCCCAGTCC ACATCTGGCT AACAATGTGG
  GAAGGGGAGG GAAGCACAGC CCACCTCTGG CCAGTAGCGG AGTCCCTGGC CCGGTGGACA
  GAGTACAACC CACCCCTGGT CAGCCGCGGA AGAAAGTGCA ACCCATCTCT GGCCAGCAAC
  S
  GGATGGACAG AGCACATCCT ACCCTTGGTG GGTGGCAGGG TCCCAGGTTC CCGGCAGGCG
  CGCGCTCTGC ACGGCCTTGT TGCGGAGGGC GCTATCCTGG TAGATGCGGC TCATTTTCCC
  CACGCCGAGG CCCTGTGGCT CCAGGAAGCA ACCGGCGCGT AGGGCGGGGC ACCTCGGGGA
  CAGGAGCTTG GAGGTCGCTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61024863	NES16103407	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51216004					SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61024863	NES16103407	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:79584878 () rs orientation: forward

Symbol	Name	Function Class
Arpin	actin-related protein 2/3 complex inhibitor	within coordinates
Cpgi19319	CpG island 19319	within coordinates
Gm31966	predicted gene, 31966	309 bp upstream
Rr649743	regulatory region 649743	50 bp distal
Rr649744	regulatory region 649744	219 bp proximal
Rr649745	regulatory region 649745	987 bp proximal
Tssr73196	transcription start site region 73196	111 bp downstream
Tssr73197	transcription start site region 73197	128 bp downstream