rs51216044 SNP Detail

Summary

• ID
  rs51216044
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:120103654 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A GGTTCAGTGA GAAAACCAGC TGTCTTAGTC AGGATTTCTA
  TTCCTGCACA AACATCAGGA CCAGGAAGCA AGCTGGGGAG GAAAGGGTTT ATTCGGCTTA
  Y
  ACTTCCATGC TGCTGTTCAT CACCAAAGGA AGTCAGGACT GGAACCCAAG CAGGTCAGAA
  AGCAGGAGCT GATGCAGAGG CCATGGAGGG ATGTTCTTTA C                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss134608818	ENSMUSSNP809333	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs51216044					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:120103654 () rs orientation: forward

Symbol	Name	Function Class
Ccl28	C-C motif chemokine ligand 28	within coordinates
Gm60502	predicted gene, 60502	1781 bp downstream
Rr270688	regulatory region 270688	1054 bp distal
Rr270689	regulatory region 270689	547 bp proximal
Rr282566	regulatory region 282566	1168 bp distal
Rr282567	regulatory region 282567	147 bp proximal