rs51217945 SNP Detail

Summary

• ID
  rs51217945
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:37918696 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGGC AGGGAATACA CGTCTCAGTA
  K
  CTTAGCATAA GTGAACTCCT TTCCA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60996236	NES16131776	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T		G	T	T	T		T
ss148901567	ENSMUSSNP3254069	ENSEMBL	ENSEMBL_Sanger	f	SNP	T						G
ss322180550	CHEV_7_39004291	CHEVERUD	SCREENING_POP	f	SNP										T					T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs51217945					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60996236	NES16131776	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:37918696 () rs orientation: forward

Symbol	Name	Function Class
Plekhf1	pleckstrin homology domain containing, family F (with FYVE domain) member 1	1382 bp downstream
Rr645765	regulatory region 645765	1070 bp distal