rs51220852 SNP Detail

Summary

• ID
  rs51220852
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:134294604 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGATTTG AACTCAGGAC
  CTTCGGAAGA GCAGTCAGTG CTCTTACCCA CTGAGCCATC TCGCCAGCCC CGGAAACTGC
  TTCTAAGACG CCCTACATGT ATAAGGGACG GATGTGAGGA AGGCTTAGCT CCCTGGCAGA
  CCGGCCTGCC TGGTCTGAGC AGTGACCTGA TCTGGATGCA GACATACCAT ATTTTCTTTC
  R
  AACAACTCTT CAACTTGTTT CCGTAGGTCA GTGATGCGTG CGTTCCATTT CTCTGAAAAT
  GAGAGGGAAC CATTTTCAGT AAATAGGGCA GCTTGGCACT CTACTCTCTA GAGCAGACAA
  CCTATCTATC AGCCCACCTC AGTCGGGGTT TTTTCCTGCC TCCCCAAGGG TCTTTCCTTT
  TTCTGTGTTT CTTGGGAACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60846274	NES16011303	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51220852					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60846274	NES16011303	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134294604 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm43481	predicted gene 43481			1315 bp downstream
Gtf2i	general transcription factor II I			Coding-Synonymous
				Noncoding-Transcript-Variant
Tssr53619	transcription start site region 53619			1317 bp upstream
Tssr53620	transcription start site region 53620			327 bp downstream
Tssr53621	transcription start site region 53621			834 bp downstream