rs51221551 SNP Detail

Summary

• ID
  rs51221551
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:99240900 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGGGCGGG GTCAACCCGA
  TGAGGCCTTG AGGGCATCCT GGGATCCCAC TGTCTGGCAT AAATGTCAAC AGAAGGGGTG
  CAGTTGTCAT TTGGGGTGAG CTAAGCGTTA CTCTTCACAT CAACCCAACA CGGGTAAACA
  TCACCTAAAA CCTGTTCCTT ACACACAGTA TCATCTGGAC TTTTTGCGGG GTGTCCTAGG
  Y
  CAGCACTGCG TTGGATCTGA CCCAAAGTCT GGGACCACTC CCAGCTGGTC CTTAAAGCCT
  TGCTTTTCTC TCTTAAACTA TTTGTTACTT AAGCCATCTG GACCCAGCTC CCAGCACAGT
  CAAACTGAGC TTAGGGACCA TTCTCTACCC CACCCCCACT CCCATCCTCA GCGTCATTTT
  AAAAACCCTG TCTGCAGGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61444649	NES16824638	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51221551					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61444649	NES16824638	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:99240900 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22193	CpG island 22193	142 bp distal
Esyt3	extended synaptotagmin-like protein 3	290 bp upstream
Rr198328	regulatory region 198328	1901 bp proximal
Rr206935	regulatory region 206935	99 bp distal
Tssr91051	transcription start site region 91051	295 bp upstream