rs51221566 SNP Detail

Summary

• ID
  rs51221566
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:3957051 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGGACATC CTGTGGTGCA
  CTGAAATGGA AAGGTAGAGT GCTGGGTGCT TGCGTCTGGC CAGGGCTGGG TTAAAAGGAA
  GGCGGCAGGC TCCTCATTTC CCCCAAATTC CCTGTGAGTG AACTTTAACA AGCGCTTTCC
  AGCATGCCAG GCCCTGGGGA GAACCTGCAC TTTTCTGTAG CTGGTTCCTG TTCAGAAGGG
  Y
  CCGGGGACCG CCCAACACAG ATGAGCCCAC TAGAACCCTC AGCACAGTGC ATGGCTTGGA
  TCATAGGTAT TTTGTGTGTG TTTTGAAAGC CAGTATAGAT GCCTGTGAGG TGCACCAGAT
  GGCACCCAGC CGGGTGGGCT CCTCCTTGGA TTTGAGGAGG ATCTAGACAG ATAAGGCTGT
  TCTCACAGAC TCCCTGAGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61337426	NES16942754	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51221566					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61337426	NES16942754	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:3957051 () rs orientation: forward

Symbol	Name	Function Class
Dnmt3a	DNA methyltransferase 3A	Intron
Tssr112533	transcription start site region 112533	1698 bp downstream
Tssr112534	transcription start site region 112534	230 bp downstream
Tssr112535	transcription start site region 112535	551 bp upstream
Tssr112536	transcription start site region 112536	622 bp upstream
Tssr112537	transcription start site region 112537	695 bp upstream
Tssr112538	transcription start site region 112538	1169 bp upstream
Tssr115622	transcription start site region 115622	784 bp downstream