rs51221653 SNP Detail

Summary

• ID
  rs51221653
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:112574451 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGCCCCCA CCCTTCACCC
  CAAGAATCAT ATTTTTAAAA GACGAAAGCA AGCTTGCATG TTAATGAGTC AGATGTGCTC
  ATTTTTTTTA TAACCATTTA TTTTTACATA AAGAATTACA TCTTGGCTGA ATATTTGATA
  ATACAGGACA CACAAACATA TTTTTCATAG TTGTTTAATA TTTTTATTTT ATAGGTAACA
  K
  CATCGAGAAT ACTGCACTGT GTAAGTACTT AGCACAAAGA ACAGGCACAT AATTCAGAGA
  CAATCAATAA TTACTGGAGG GCATATTAAT CTGATACTTA CAAGCTGTGG GTGCATGGCA
  GGGAAACGCT AACACGCTCT GTTTTCTGTA GTTAAATTAC TACTTGTCTA GAAAAGCAGG
  AAACTCGTCA CGTCCTGTGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss145238568	ENSMUSSNP6546762	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs51221653					SNP	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:112574451 () rs orientation: forward

Symbol	Name	Function Class
Gm48876	predicted gene, 48876	within coordinates
Gm59881	predicted gene, 59881	1437 bp upstream
Gm59893	predicted gene, 59893	911 bp downstream
Rr369776	regulatory region 369776	1584 bp upstream
Rr395952	regulatory region 395952	280 bp upstream
Rr486369	regulatory region 486369	1967 bp distal
Rr486370	regulatory region 486370	16 bp proximal
Rr486371	regulatory region 486371	116 bp proximal
Rr486372	regulatory region 486372	958 bp proximal
Rr486373	regulatory region 486373	1459 bp proximal
Tssr121117	transcription start site region 121117	231 bp upstream
Tssr121118	transcription start site region 121118	310 bp upstream
Tssr124051	transcription start site region 124051	122 bp downstream