rs51223495 SNP Detail

Summary

• ID
  rs51223495
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16678237 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGACAGTT TGATTTGGGG
  CTTTATTAAT CAGAGGTCTA TCTGTCCCGC AGGAATGAGG ATGTAGTTCG GTTGGTAGAG
  TGCTTACGCA GCATGCAGAA AACCCTGGCC CCGAGCCCCA GAGACGTATT AATAAAACAG
  CGCAGGCTAG ACACCACTGA GGCCTGTAAT CGCAGGAGGG CGGAAGCAGG AGAATCAGAA
  R
  TTCAAGGTCA TCCTTGGCTA CATGGCAAGT TCAAGGCTAG CCTGGCCTTG CTTCAAAAAA
  CAAAGCCAGA ATAAATGACC CTGGTGGAAG CCTCTATTCT TTCCAAGGAG GTGTCTGTCT
  ATCCCTTGAA GTGAGACTGA TCACCTTCAG TGGTTTTCAC AGTGACTTTG TCTTCCTTCT
  TGGCTCACTA GTCCCTAAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148400004	ENSMUSSNP2476266	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51223495					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16678237 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18406	CpG island 18406	142 bp proximal
Cpgi18407	CpG island 18407	1948 bp proximal
Gm71929	predicted gene, 71929	980 bp downstream
Pnma8b	PNMA family member 8B	370 bp upstream
Rr368243	regulatory region 368243	144 bp upstream
Rr642821	regulatory region 642821	943 bp distal
Rr642822	regulatory region 642822	within coordinates
Rr642823	regulatory region 642823	293 bp proximal
Rr642824	regulatory region 642824	1331 bp proximal
Tssr64660	transcription start site region 64660	333 bp upstream
Tssr64661	transcription start site region 64661	1382 bp upstream
Tssr70792	transcription start site region 70792	1337 bp downstream