rs51226627 SNP Detail

Summary

• ID
  rs51226627
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:114780460 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGCA TAGGGCTGCC TGCGGCTTTA
  G
  TAACTACTAT TATTATATGA TTAAT                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss132864678	ENSMUSSNP4995500	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	A/J
rs51226627					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:114780460 () rs orientation: forward

Symbol	Name	Function Class
Cd300a	CD300A molecule	within coordinates
Cpgi4106	CpG island 4106	529 bp proximal
Rr459730	regulatory region 459730	466 bp proximal
Tssr105810	transcription start site region 105810	550 bp upstream
Tssr105811	transcription start site region 105811	581 bp upstream
Tssr105812	transcription start site region 105812	638 bp upstream
Tssr105813	transcription start site region 105813	743 bp upstream
Tssr105814	transcription start site region 105814	1378 bp upstream
Tssr111666	transcription start site region 111666	590 bp downstream