rs51227531 SNP Detail

Summary

• ID
  rs51227531
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:174501092 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTGAAGATA AAAATAAGAC ATGGCAGCCA AGGAGTTGGC
  TGAGTGGATA GACATATCTA TTGTGTAAAT GTGAGGACCA GAGTTCTCTA AAACCTGTGT
  W
  AATGCAGGGT GTGCACAGCA ACCACGTGTA ATTTCAGTGC CCAGAGGCAG AGAAATAGAT
  TGCTAGAGCT AAGAGCAAGC TGGCTAGTTA GAGTAGCCA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146292457	ENSMUSSNP3400668	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
ss320143628	CHEV_1_176603657	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51227531					SNP	A	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:174501092 () rs orientation: forward

Symbol	Name	Function Class
Fmn2	formin 2	Intron
Rr423785	regulatory region 423785	1225 bp proximal
Rr423786	regulatory region 423786	1298 bp proximal