rs51227758 SNP Detail

Summary

• ID
  rs51227758
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:41367316 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAATGTAA ACAAAATGCA
  CCACCATTTC CATCAAAGGG TTAAATAGGA CAAAACCACA TATTAAAAAC AAAAAAAACA
  AAAAACTGTA AAGAAGCCAC ATGGCAGGAA TTCAAATTCC CTCAGGGTCA GCACTTCTGA
  AAATATGAGG ATGTGCTCAG GGTTGCTTCC TCTTCTCAAA AGTTGTGTTC TGCCTTTCAG
  S
  GAAGCCATTT GAGAAGGCAA CTGAGGAGAA GCGTGAGGCC AAGCTGTGGT CACTCAGAGT
  GAGGCACAGA ACCCCTTTGC ACACAAATGG AAGATTATGG GGACAGGGAA GGCAGATAAC
  CAGCCCAACA CTAAAGAGAG GGAGAAGGCT AGGCTGACTC CATGACAGAC TTCAAACTGG
  CAGTTAAGGA GACAGGGCCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60398211	NES15902471	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	G	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51227758					SNP	C	C	C	C	C	C	C	C	C	C	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60398211	NES15902471	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:41367316 () rs orientation: forward

Symbol	Name	Function Class
Rr374863	regulatory region 374863	within coordinates
Rr575947	regulatory region 575947	within coordinates