rs51234080 SNP Detail

Summary

• ID
  rs51234080
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:126772647 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCACCATGC TGTACCATTC TGGTAAAGAA CTTGTCTTCA
  TTTTGTCCAA ACTCTGACCC TGTGGGAAGC TGAGTTTAAA GGACTGAAAG AGGCAATGTC
  S
  GGGTAGCACA TTGTTCAGAT TATCTCACAC AGGTATTAAT AGATATTTGT AGTTAAGATT
  TATGCTAAGA ATCAAAAGCA AAGCCACTAC AAAAATATT                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147514231	ENSMUSSNP2192835	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51234080					SNP	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126772647 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm75308	predicted gene, 75308			1966 bp upstream
Rr564422	regulatory region 564422			1602 bp proximal
Sppl2a	signal peptide peptidase like 2A			Intron
				Noncoding-Transcript-Variant
Tssr19974	transcription start site region 19974			1697 bp downstream
Tssr26084	transcription start site region 26084			1174 bp downstream