rs51236881 SNP Detail

Summary

• ID
  rs51236881
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:68913586 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTCGGGAC TCTTCTGCCG
  CAGCCACCAT GCGGCGTAAG GGCACCAAGC CCTCCACTGC CTGCCACCAG GAGGAAGGGC
  CGCCGCCCTC CCAGGACGGT GCCCACAGCG ACGAAGAGAT GGAGCAACCG GCCGGCGAAG
  CGGAGAGCGC TGCACCCGCA AGTGAGTGAC AGGTCGGGAT CCCCGTGCGT CGGAAGCCTG
  Y
  GGAGACCCTC TGAGGGTGGC GGGGCGCAGG CGACGACAGG TTGATTTGGG AAGCTCCGGA
  AAGCCGTTCT TTGGTTTTCA GAGGAATTCC ATGCAGTTTG CTCTAACGGT TCTGGAAGAT
  ATGAGAGTGA GCGGAAAACT TGCGTTGTGA GTTTCTGTGT TTTAGAGTAG TACTGACCTC
  TTTCTCATAT TTCCGCTGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss135264493	ENSMUSSNP6009184	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs51236881					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68913586 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13255	CpG island 13255	within coordinates
Ift80	intraflagellar transport 80	1694 bp upstream
Rr397713	regulatory region 397713	1464 bp downstream
Smc4	structural maintenance of chromosomes 4	within coordinates
Tssr901	transcription start site region 901	1840 bp upstream
Tssr29506	transcription start site region 29506	1522 bp downstream
Tssr29507	transcription start site region 29507	1232 bp downstream
Tssr29508	transcription start site region 29508	1111 bp downstream
Tssr29509	transcription start site region 29509	940 bp downstream
Tssr29510	transcription start site region 29510	899 bp downstream
Tssr29511	transcription start site region 29511	768 bp downstream
Tssr29512	transcription start site region 29512	511 bp downstream
Tssr29513	transcription start site region 29513	307 bp downstream
Tssr29514	transcription start site region 29514	181 bp downstream
Tssr33516	transcription start site region 33516	1875 bp upstream
Tssr33517	transcription start site region 33517	1786 bp upstream
Tssr33518	transcription start site region 33518	1754 bp upstream
Tssr33519	transcription start site region 33519	1708 bp upstream
Tssr33520	transcription start site region 33520	1689 bp upstream
Tssr33521	transcription start site region 33521	1668 bp upstream
Tssr33522	transcription start site region 33522	170 bp downstream