rs51238084 SNP Detail

Summary

• ID
  rs51238084
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:73956762 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTTA TAGGTGCCAT TTATTAAATA
  Y
  GTCTTTTTGT AATCACAATT TCATT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss137890834	ENSMUSSNP3524770	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss324099238	CHEV_12_75010975	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51238084					SNP	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:73956762 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4761	CpG island 4761	974 bp distal
Gm20235	predicted gene, 20235	567 bp upstream
Hif1a	hypoxia inducible factor 1, alpha subunit	Intron
Rr467872	regulatory region 467872	494 bp distal
Rr467873	regulatory region 467873	1997 bp distal
Rr467874	regulatory region 467874	753 bp distal
Tssr113839	transcription start site region 113839	1973 bp downstream
Tssr113840	transcription start site region 113840	1922 bp downstream
Tssr113841	transcription start site region 113841	1818 bp downstream
Tssr113842	transcription start site region 113842	1752 bp downstream
Tssr113843	transcription start site region 113843	1607 bp downstream
Tssr113844	transcription start site region 113844	368 bp downstream
Tssr113845	transcription start site region 113845	97 bp upstream