rs51238203 SNP Detail

Summary

• ID
  rs51238203
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:59037743 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTAGGTTAC AAAAATGTTA GTCAGGCTTC ATTTAAGTTA
  CTTTACAATT TACAGAAAAG TAGACTATAG ATGGAACTTT GTAAGTATCT TCTTCATCCT
  Y
  GCCACTCGTG AATTGAAACT AAAACCACTC TTTACGTATT TTTTTTTAAG CCTTAGAGGA
  AGAAATCAGA ACTTAAGGAT CAAGGAAATG AAAATATAAA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60415187	NES15910266	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51238203					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60415187	NES15910266	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:59037743 () rs orientation: forward

Symbol	Name	Function Class
Med12l	mediator complex subunit 12-like	within coordinates
P2ry14	purinergic receptor P2Y, G-protein coupled, 14	within coordinates
Rr577320	regulatory region 577320	164 bp proximal
Rr577321	regulatory region 577321	290 bp proximal
Rr577322	regulatory region 577322	694 bp proximal
Rr577323	regulatory region 577323	995 bp proximal
Rr577324	regulatory region 577324	1683 bp proximal
Tssr29228	transcription start site region 29228	1543 bp upstream
Tssr29229	transcription start site region 29229	1973 bp upstream
Tssr33381	transcription start site region 33381	209 bp downstream
Tssr33382	transcription start site region 33382	252 bp downstream
Tssr33383	transcription start site region 33383	288 bp downstream
Tssr33384	transcription start site region 33384	307 bp downstream
Tssr33385	transcription start site region 33385	324 bp downstream
Tssr33386	transcription start site region 33386	358 bp downstream
Tssr33387	transcription start site region 33387	428 bp downstream
Tssr33388	transcription start site region 33388	740 bp downstream
Tssr33389	transcription start site region 33389	761 bp downstream
Tssr33390	transcription start site region 33390	800 bp downstream
Tssr33391	transcription start site region 33391	905 bp downstream