rs51238485 SNP Detail

Summary

• ID
  rs51238485
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30826837 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C CGTCTTCCTA ATTATAGAGG TTAACCTTAT CCAGTTCTTG
  GGGAGATAAG GCTGAGACAT CCCAGAGACC TACTTATGAC ACCTGAGATC CCTCGGACTG
  G
  AGATCTCAGG ACCTAAGAGG GCATGGCGGA GTGAAAGGGT CAAGCTAGGT ATACATAGAA
  ACCTGTAGAC CTTATCCAAG CCAAAAGGGT ACCTTGGCAT C                    
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss148700232	ENSMUSSNP6195378	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	A/J
rs51238485					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30826837 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18836	CpG island 18836	1987 bp distal
Cpgi18837	CpG island 18837	within coordinates
Rr645025	regulatory region 645025	579 bp distal
Rr645026	regulatory region 645026	within coordinates
Rr645027	regulatory region 645027	1082 bp proximal
Scn1b	sodium channel, voltage-gated, type I, beta	409 bp upstream
Tssr71935	transcription start site region 71935	687 bp upstream
Tssr71936	transcription start site region 71936	640 bp upstream
Tssr71937	transcription start site region 71937	478 bp upstream
Tssr71938	transcription start site region 71938	420 bp upstream
Tssr71939	transcription start site region 71939	370 bp upstream
Tssr71940	transcription start site region 71940	235 bp upstream