rs51238501 SNP Detail

Summary

• ID
  rs51238501
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:126932090 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTATTTTAT TTTATTTTAT
  TATTTTTGTG GGCTGGAAAG TTGACTCAGT GGTTGAGAGT AATTGCTGTT CTCACAAAGG
  ATGAAAGTTT GATTCCCAGC CCCCACTTGG AGGCTCACCA CCTCCTTACA CACCAGGCAT
  GCATTTGGTG CACAGATATG CATGCACACA ATAATAAAAA TAAATCTAAA ATTTAAACCT
  Y
  TTGTTATTGG TGGGGAGTGG GGGGGGGGCT ACCATAGTGC ACAGGTGGGG GTCAGGGGAC
  AACTTTGAAG GGTCTGTTCT CTCCTTCCAC TGTGGCTCTT GGACCTAAAT TCAAGCGGTC
  AGGCTTGTAT GGCAAGTGTT CTGACTCACT GAACCATCTT ACGGCTGCTG TTGTTGTTGT
  TGTTTTTTTT GGTTTTTTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss145879512	ENSMUSSNP1637394	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T		T
ss322451436	CHEV_7_134476432	CHEVERUD	SCREENING_POP	f	SNP				C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs51238501					SNP	T	C	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126932090 () rs orientation: forward

Symbol	Name	Function Class
Itgal	integrin alpha L	Intron
Tssr69200	transcription start site region 69200	556 bp downstream
Tssr69201	transcription start site region 69201	652 bp upstream
Tssr69202	transcription start site region 69202	684 bp upstream
Tssr69203	transcription start site region 69203	732 bp upstream
Tssr69204	transcription start site region 69204	863 bp upstream
Tssr69205	transcription start site region 69205	1795 bp upstream